Professor Ian James

Professor

About me

I am currently Professor and Head of Biostatistics, Institute for Immunology and Infectious Diseases.  http://www.iiid.murdoch.edu.au

Research areas

Biostatistics; Applied Statistics; Immunogenomics

Publications

Journals

  • Gupta, V., Hone, E., Pedrini, S., Doecke, J., O'Bryant, S., James, I., Bush, A., Rowe, C., Villemagne, V., Ames, D., Masters, C., Martins, R., (2017), Altered levels of blood proteins in Alzheimer's disease longitudinal study: Results from Australian Imaging Biomarkers Lifestyle Study of Ageing cohort, Alzheimers & Dementia: Diagnosis, Assessment & Disease Monitoring, 8, , pages 60 - 72.
  • Cull, G., Hall, D., Fabis-Pedrini, M., Carroll, W., Forster, L., Robins, F., Ghassemifar, R., Crosbie, C., Walters, S., James, I., Augustson, B., Kermode, A., (2017), Lymphocyte reconstitution following autologous stem cell transplantation for progressive MS, Multiple Sclerosis Journal Experimental, Translational and Clinical, January-March 2017, , pages 1 - 9.
  • Goozee, K., Chatterjee, P., James, I., Shen, K., Sohrabi, H., Asih, P., Dave, P., Ball, B., ManYan, C., Taddei, K., Chung, R., Garg, M., Martins, R., (2017), Alterations in erythrocyte fatty acid composition in preclinical Alzheimer's disease, Scientific Reports, 7, 1, pages 676 -.
  • Karnes, J., Shaffer, C., Cronin, R., Bastarache, L., Gaudieri, S., James, I., Pavlos, R., Steiner, H., Mosley, J., Mallal, S., Denny, J., Phillips, E., Roden, D., (2017), Influence of human leukocyte antigen (HLA) alleles and killer cell immunoglobulin-like receptors (KIR) types on heparin-induced thrombocytopenia (HIT), Pharmacotherapy: The Journal of Human Pharmacology and Drug Therapy, 37, 9, pages 1164 - 1171.
  • Tay, J., James, I., Hughes, Q., Tiao, J., Baker, R., (2017), Identification of reference miRNAs in plasma useful for the study of oestrogen-responsive miRNAs associated with acquired Protein S deficiency in pregnancy, BMC Research Notes, 10, 1, pages 312 -.
  • Castley, A., Williams, L., James, I., Guelfi, G., Berry, C., Nolan, D., (2016), Plasma CXCL10, sCD163 and sCD14 Levels Have Distinct Associations with Antiretroviral Treatment and Cardiovascular Disease Risk Factors, PLoS One, 11, 6, pages -.
  • Magaret, A., Dong, L., John, M., Mallal, S., James, I., Warren, T., Gaudieri, S., Koelle, D., Wald, A., (2016), HLA Class I and II alleles, heterozygosity and HLA-KIR interactions are associated with rates of genital HSV shedding and lesions, Genes and Immunity, 17, 7, pages 412 - 418.
  • Jorgensen, A., O'Leary, P., James, I., Skeaff, S., Sherriff, J., (2016), Assessment of Breast Milk Iodine Concentrations in Lactating Women in Western Australia, Nutrients, 8, 11, pages pii:E699 -.
  • Chatterjee, P., Lim, W., Shui, G., Gupta, V., James, I., Fagan, A., Xiong, C., Sohrabi, H., Taddei, K., Brown, B., Benzinger, T., Masters, C., Snowden, S., Wenk, M., Bateman, R., Morris, J., Martins, R., (2016), Plasma Phospholipid and Sphingolipid Alterations in Presenilin1 Mutation Carriers: A Pilot Study, Journal of Alzheimer's Disease, 50, 3, pages 887 - 894.
  • Tschochner, M., Leary, S., Cooper, D., Strautins, K., Chopra, A., Clark, H., Choo, L., Dunn, D., James, I., Carroll, W., Kermode, A., Nolan, D., (2016), Identifying patient-specific Epstein-Barr Nuclear antigen-1 genetic variation and potential autoreactive targets relevant to multiple sclerosis pathogenesis, PLoS One, 11, 2, pages 1 - 22.
  • Maxwell, S., James, I., Dickinson, J., O'Leary, P., (2016), First trimester screening cut-offs for noninvasive prenatal testing as a contingent screen: Balancing detection and screen-positive rates for trisomy 21, The Australian and New Zealand Journal of Obstetrics and Gynaecology, 56, 1, pages 29 - 35.
  • Barnard, R., Chopra, A., James, I., Blinco, J., Watson, M., Jabara, C., Hazuda, D., Lemon, S., Mallal, S., Gaudieri, S., (2016), Primer ID ultra-deep sequencing reveals dynamics of drug resistance-associated variants in breakthrough hepatitis C viruses: relevance to treatment outcome and resistance screening, Antiviral Therapy, 21, 7, pages 567 - 577.
  • Fabis Pedrini, M., Seewann, A., Bennett, K., Wood, A., James, I., Burton, J., Marshall, B., Carroll, W., Kermode, A., (2015), Helicobacter pylori infection as a protective factor against multiple sclerosis risk in females, Journal of Neurology, Neurosurgery and Psychiatry, 86, 6, pages 603 - 607.
  • Bourke, J., Pavlos, R., James, I., Phillips, E., (2015), Improving the Effectiveness of Penicillin Allergy De-labeling, Journal of Allergy and Clinical Immunology, 3, 3, pages 365 - 374.e1.
  • Silbert, B., Heaton, A., Cash, R., James, I., Dunne, J., Lawn, N., Silbert, P., Mastaglia, F., Thickbroom, G., (2015), Evidence for an excitatory GABAA response in human motor cortex in idiopathic generalised epilepsy, Seizure - European Journal of Epilepsy, 26, , pages 36 - 42.
  • Strautins, K., Tschochner, M., James, I., Choo, L., Dunn, D., Kermode, A., Carroll, W., Nolan, D., (2014), Combining HLA-DR risk alleles and anti-Epstein-Barr virus antibody profiles to stratify multiple sclerosis risk, Multiple Sclerosis Journal, 20, 3, pages 286 - 294.
  • Mastaglia, F., Rojana-udomsart, A., James, I., Needham, M., Day, T., Kiers, L., Corbett, A., Saunders, A., Lutz, M., Roses, A., (2013), Polymorphism in the TOMM40 gene modifies the risk of developing sporadic inclusion body myositis and the age of onset of symptoms, Neuromuscular Disorders, 23, 12, pages 969 - 974.
  • Qiu, W., Pham, K., James, I., Nolan, D., Castley, A., Christiansen, F., Czarniak, P., Luo, Y., Wu, J., Garlepp, M., Wilton, S., Carroll, W., Mastaglia, F., Kermode, A., (2013), The influence of non-HLA gene polymorphisms and interactions on disease risk in a Western Australian multiple sclerosis cohort, Journal of Neuroimmunology, 261, 1-2, pages 92 - 97.
  • Johnson, L., Putrino, D., James, I., Rodrigues, J., Stell, R., Thickbroom, G., Mastaglia, F., (2013), The effects of a supervised Pilates training program on balance in Parkinson's disease, Advances in Parkinson's Disease, 2, 2, pages 58 - 61.
  • Johnson, L., James, I., Rodrigues, J., Stell, R., Thickbroom, G., Mastaglia, F., (2013), Clinical and posturographic correlates of falling in Parkinson's disease, Movement Disorders, 28, 9, pages 1250 - 1256.
  • Hertz, T., Oshansky, C., Roddam, P., DeVincenzo, J., Caniza, M., Jojic, N., Mallal, S., Phillips, E., James, I., Halloran, M., Thomas, P., Corey, L., (2013), HLA targeting efficiency correlates with human T-cell response magnitude and with mortality from influenza A infection, National Academy of Sciences. Proceedings, 110, 33, pages 13492 - 13497.
  • Rojana-udomsart, A., Mitrpant, C., James, I., Witt, C., Needham, M., Day, T., Kiers, L., Corbett, A., Martinez, P., Wilton, S., Mastaglia, F., (2013), Analysis of HLA-DRB3 alleles and supertypical genotypes in the MHC Class II region in sporadic inclusion body myositis, Journal of Neuroimmunology, 254, 1-2, pages 174 - 177.
  • Rajasuriar, R., Booth, D., Gouillou, M., Spelman, T., James, I., Solomon, A., Chua, K., Stewart, G., Deeks, S., Bangsberg, D., Muzoora, C., Cameron, P., Hunt, P., Martin, J., Lewin, S., (2012), The role of SNPs in the -chain of the IL-7R gene in CD4+ T-cell recovery in HIV-infected African patients receiving suppressive cART, Genes and Immunity, 13, 1, pages 83 - 93.
  • Desmond, C., Gaudieri, S., James, I., Pfafferott, K., Chopra, A., Lau, G., Audsley, J., Day, C., Chivers, S., Gordon, A., Revill, P., Bowden, S., Ayres, A., Desmond, P., Thompson, A., Roberts, S., Locarnini, S., Mallal, S., Lewin, S., (2012), Viral adaptation to host immune responses occurs in chronic hepatitis B virus (HBV)infection, and adaptation is greatest in HBV e Antigen-Negative Disease, Journal of Virology, 86, 2, pages 1181 - 1192.
  • Rojana-udomsart, A., Bundell, C., James, I., Castley, A., Martinez, P., Christiansen, F., Hollingsworth, P., Mastaglia, F., (2012), Frequency of autoantibodies and correlation with HLA-DRB1 genotype in sporadic inclusion body myositis (s-IBM): A population control study, Journal of Neuroimmunology, 249, 1-2, pages 66 - 70.
  • Rojana-udomsart, A., James, I., Castley, A., Needham, M., Scott, A., Day, T., Kiers, L., Corbett, A., Sue, C., Witt, C., Martinez, P., Christiansen, F., Mastaglia, F., (2012), High-resolution HLA-DRB1 genotyping in an Australian inclusion body myositis (s-IBM) cohort: An analysis of disease-associated alleles and diplotypes, Journal of Neuroimmunology, 250, 1-2, pages 77 - 82.
  • Blais, M., Zhang, Y., Rostron, T., Griffin, H., Taylor, S., Xu, K., Yan, H., Wu, H., James, I., John, M., Dong, T., Rowland-Jones, S., (2012), High frequency of HIV mutations associated with HLA-C suggests enhanced HLA-C - Restricted CTL selective pressure associated with an AIDS-protective polymorphism, Journal of Immunology, 188, 9, pages 4663 - 4670.
  • Keane, N., Roberts, S., Almeida, C., Krishnan, T., Chopra, A., Tulloch, E., Pavlos, R., Tschochner, M., Carlson, J., Mallal, S., Heckerman, D., James, I., John, M., (2012), High-avidity, high-IFN-producing CD8 T-cell responses following immune selection during HIV-1 infection, Immunology and Cell Biology, 90, 2, pages 224 - 234.
  • Nolan, D., Castley, A., Tschochner, M., James, I., Qiu, W., Sayer, D., Christiansen, F., Witt, C., Mastaglia, F., Carroll, W., Kermode, A., (2012), Contributions of vitamin D response elements and HLA promoters to multiple sclerosis risk, Neurology, 79, 6, pages 538 - 546.
  • Reeves, K., McKinnon, E., James, I., (2012), Correction for Founder Effects in Host-Viral Association Studies via Principal Components, Statistical Applications in Genetics and Molecular Biology, 11, 4, pages 1 - 15.
  • Yuen, E., James, I., Taplin, R., Ho, G., (2012), Socio-environmental factors affecting water demand in discrete aboriginal communities in Australia, International Journal of Water, 7, 3, pages 240 - 258.
  • Dong, T., Zhang, Y., Xu, K., Yan, H., James, I., Peng, Y., Blais, M., Gaudieri, S., Chen, X., Lun, W., Wu, H., Qu, W., Rostron, T., Li, N., Mao, Y., Mallal, S., Xu, X., McMichael, A., John, M., Rowland-Jones, S., (2011), Extensive HLA-driven viral diversity following a narrow-source HIV-1 outbreak in rural China, Blood, 118, 1, pages 98 - 106.
  • Pfafferott, K., Gaudieri, S., Ulsenheimer, A., James, I., Heeg, M., Nolan, D., John, M., Rauch, A., Mallal, S., Lucas, A., Klenerman, P., Diepolder, H., Lucas, M., (2011), Constrained pattern of viral evolution in acute and early HCV infection limits viral plasticity, PLoS One, 6, 2, pages -.
  • Morahan, G., Mehta, M., James, I., Chen, W., Concannon, P., Akolkar, B., Erlich, H., Hilner, J., Julier, C., Nerup, J., Nierras, C., Pociot, F., Todd, J., Rich, S., (2011), Tests for genetic interactions in type 1 diabetes linkage and stratification analyses of 4,422 affected sib-pairs, Diabetes, 60, 3, pages 1030 - 1040.
  • Qiu, W., Raven, S., James, I., Luo, Y., Wu, J., Castley, A., Christiansen, F., Carroll, W., Mastaglia, F., Kermode, A., (2011), Spinal cord involvement in multiple sclerosis: A correlative MRI and high-resolution HLA-DRB1 genotyping study, Journal of the Neurological Sciences, 300, 1-2, pages 114 - 119.
  • Hertz, T., Nolan, D., James, I., John, M., Gaudieri, S., Phillips, E., Huang, J., Riadi, G., Mallal, S., Jojic, N., (2011), Mapping the landscape of host-pathogen coevolution: HLA class I binding and its relationship with evolutionary conservation in human and viral proteins, Journal of Virology, 85, 3, pages 1310 - 1321.
  • Merani, S., Petrovic, D., James, I., Chopra, A., Cooper, D., Freitas, E., Rauch, A., di Iulio, J., John, M., Lucas, M., Fitzmaurice, K., McKiernan, S., Norris, S., Kelleher, D., Klenerman, P., Gaudieri, S., (2011), Effect of immune pressure on hepatitis C virus evolution: Insights from a single-source outbreak, Hepatology, 53, 2, pages 396 - 405.
  • Qiu, W., James, I., Carroll, W., Mastaglia, F., Kermode, A., (2011), HLA-DR allele polymorphism and multiple sclerosis in Chinese populations: A meta-analysis, Multiple Sclerosis Journal, 17, 4, pages 382 - 388.
  • Wu, J., Qiu, W., Castley, A., James, I., Mastaglia, F., Christiansen, F., Carroll, W., Joseph, J., Kermode, A., (2010), Modifying effects of HLA-DRB1 allele interactions on age at onset of multiple sclerosis in Western Australia, Multiple Sclerosis Journal, 16, 1, pages 15 - 20.
  • Wu, J., Qiu, W., Castley, A., James, I., Joseph, J., Christiansen, F., Carroll, W., Mastaglia, F., Kermode, A., (2010), Presence of CSF oligoclonal bands (OCB) is associated with the HLA-DRB1 genotype in a West Australian multiple sclerosis cohort, Journal of the Neurological Sciences, 288, 1-2, pages 63 - 67.
  • Qiu, W., Bundell, C., Wu, J., Castley, A., James, I., Hollingsworth, P., Christiansen, F., Carroll, W., Mastaglia, F., Kermode, A., (2010), Low level of systemic autoimmunity in Western Australian multiple sclerosis patients, Multiple Sclerosis Journal, 16, 3, pages 351 - 354.
  • Wu, J., James, I., Qiu, W., Castley, A., Christiansen, F., Carroll, W., Mastaglia, F., Kermode, A., (2010), Influence of HLA-DRB1 allele heterogeneity on disease risk and clinical course in a West Australian MS cohort: a high-resolution genotyping study, Multiple Sclerosis Journal, 16, 5, pages 526 - 532.
  • Wu, J., James, I., Qiu, W., Castley, A., Christiansen, F., Carroll, W., Mastaglia, F., Kermode, A., (2010), HLA-DRB1 allele heterogeneity influences multiple sclerosis severity as well as risk in Western Australia, Journal of Neuroimmunology, 219, 1-2, pages 109 - 113.
  • John, M., Heckerman, D., James, I., Park, L., Carlson, J., Chopra, A., Gaudieri, S., Nolan, D., Haas, D., Riddler, S., Haubrich, R., Mallal, S., (2010), Adaptive interactions between HLA and HIV-1: Highly divergent selection imposed by HLA class I molecules with common supertype motifs, Journal of Immunology, 184, 8, pages 4368 - 4377.
  • Qiu, W., Wu, J., Castley, A., James, I., Joseph, J., Christiansen, F., Carroll, W., Mastaglia, F., Kermode, A., (2010), Clinical profile and HLA-DRB1 genotype of late onset multiple sclerosis in Western Australia, Journal of Clinical Neuroscience, 17, 8, pages 1009 - 1013.
  • Gaudieri, S., Gaudieri, S., Rauch, A., Rauch, A., Pfafferott, K., Barnes, E., Cheng, W., McCaughan, G., Shackel, N., Jeffrey, G., Mollison, L., Baker, R., Furrer, H., Gunthard, H., Freitas, E., Humphreys, I., Klenerman, P., Mallal, S., James, I., Roberts, S., Nolan, D., Lucas, M., Lucas, M., (2009), Hepatitis C virus drug resistance and immune-driven adaptations: Relevance to new antiviral therapy, Hepatology, 49, 4, pages 1069 - 1082.
  • James, I., McKinnon, E., Gaudieri, S., Gaudieri, S., Morahan, G., (2009), Missingness in the T1DGC MHC fine-mapping SNP data: Association with HLA genotype and potential influence on genetic association studies, Diabetes, obesity & metabolism, 11, SUPPL. 1, pages 101 - 107.
  • Rauch, A., Rauch, A., James, I., Pfafferott, K., Nolan, D., Klenerman, P., Cheng, W., Mollison, L., McCaughan, G., Shackel, N., Jeffrey, G., Baker, R., Freitas, E., Humphreys, I., Furrer, H., Gunthard, H., Hirschel, B., Mallal, S., John, M., Lucas, M., Barnes, E., Gaudieri, S., Gaudieri, S., (2009), Divergent adaptation of hepatitis C virus genotypes 1 and 3 to human leukocyte antigen-restricted immune pressure, Hepatology, 50, 4, pages 1017 - 1029.
  • Morahan, G., Mehta, M., McKinnon, E., James, I., (2009), Effect of linkage status of affected sib-pairs on the search for novel type 1 diabetes susceptibility genes in the HLA complex, Diabetes, obesity & metabolism, 11, SUPPL. 1, pages 67 - 73.
  • Price, P., James, I., (2009), IL1A alleles associate with a virological response to antiretroviral therapy in HIV patients beginning therapy with advanced disease, AIDS, 23, 9, pages 1173 - 1176.
  • Morahan, G., McKinnon, E., Berry, J., Browning, B., Julier, C., Pociot, F., James, I., (2009), Evaluation of IL12B as a candidate type I diabetes susceptibility gene using data from the Type I Diabetes Genetics Consortium, Genes and Immunity, 10, Suppl 1, pages S64 - S68.
  • Tschochner, M., Chopra, A., Maiden, T., Ahmad, I., James, I., Furrer, H., Gunthard, H., Mallal, S., Rauch, A., John, M., (2009), Effects of HIV type-1 immune selection on susceptibility to integrase inhibitor resistance, Antiviral Therapy, 14, 7, pages 953 - 964.
  • Mastaglia, F., Needham, M., Scott, A., James, I., Zilko, P., Day, T., Kiers, L., Corbett, A., Witt, C., Allcock, R., Laing, N., Garlepp, M., Christiansen, F., (2009), Sporadic inclusion body myositis: HLA-DRB1 allele interactions influence disease risk and clinical phenotype, Neuromuscular Disorders, 19, 11, pages 763 - 765.
  • McKinnon, E., Morahan, G., Nolan, D., James, I., (2009), Association of MHC SNP genotype with susceptibility to type 1 diabetes: A modified survival approach, Diabetes, obesity & metabolism, 11, SUPPL. 1, pages 92 - 100.
  • Needham, M., Hooper, A., James, I., van Bockxmeer, F., Corbett, A., Day, T., Garlepp, M., Mastaglia, F., (2008), Apolipoprotein epsilon alleles in sporadic inclusion body myositis: A reappraisal, Neuromuscular Disorders, 18, , pages 150 - 152.
  • Needham, M., James, I., Corbett, A., Day, T., Christiansen, F., Phillips, B., Mastaglia, F., (2008), Sporadic inclusion body myositis: Phenotypic variability and influence of HLA-DR3 in a cohort of 57 Australian cases, Journal of Neurology, Neurosurgery and Psychiatry, 79, 9 (Sep), pages 1056 - 1060.
  • Rauch, A., Rauch, A., Gaudieri, S., Gaudieri, S., Evison, J., Nolan, D., Cavassini, M., Weber, R., James, I., Furrer, H., (2008), Low current and nadir CD4+ T-cell counts are associated with higher hepatitis C virus RNA levels in the Swiss HIV Cohort Study, Antiviral Therapy, 13, 3, pages 455 - 460.
  • Almeida, C., Martin, A., Nolan, D., Lucas, A., CAMERON, P., James, I., Phillips, E., Mallal, S., (2008), Cytokine profiling in abacavir hypersensitivity patients, Antiviral Therapy, 13, 2, pages 281 - 288.
  • Kulski, J., Shigenari, A., Shiina, T., Ota, M., Hosomichi, K., James, I., Inoko, H., (2008), Human endogenous retrovirus (HERVK9) structural polymorphism with haplotypic HLA-A allelic associations, Genetics (Print): a periodical record of investigations bearing on heredity and variation, 180, 1 (Sep), pages 445 - 457.
  • Lim, A., James, I., French, M., Price, P., (2008), Immunological profiles of immune restoration disease presenting as mycobacterial lymphadenitis and cryptococcal meningitis, HIV Medicine, 9, 5 (May), pages 307 - 316.
  • Rauch, A., Rauch, A., Nolan, D., Furrer, H., McKinnon, E., John, M., Mallal, S., Gaudieri, S., Gaudieri, S., Gunthard, H., Schmid, P., Battegay, M., Hirschel, B., Telenti, A., James, I., (2008), HLA-Bw4 homozygosity is associated with an impaired CD4 T Cell recovery after initiation of antiretroviral therapy, Clinical Infectious Diseases, 46, (June) 12, pages 1921 - 1925.
  • Hammond, E., Shaw, K., Carnley, B., P'ng, S., James, I., Herrmann, R., (2007), Quantitative Determination of JAK2 V617F by TaqMan: An absolute measure of averaged copies per cell that may be associated with the different types of myeloproliferative disorders, Journal of molecular diagnostics, 9, 2, pages 242 - 248.
  • Lim, A., Tan, D., Price, P., Kamarulzaman, A., Tan, H., James, I., French, M., (2007), Proportions of circulating T cells with a regulatory cell phenotype increase with HIV-associated immune activation and remain high on antiretroviral therapy, AIDS, 21, , pages 1525 - 1534.
  • Martin, A., Almeida, C., Cameron, P., Purcell, A., Nolan, D., James, I., McCluskey, J., Phillips, E., Landay, A., Mallal, S., (2007), Immune responses to abacavir in antigen-presenting cells from hypersensitive patients, AIDS, 21, , pages 1233 - 1244.
  • Harari, A., Cellerai, C., Enders, F., Kostler, J., Codarri, L., Tapia, G., Boyman, O., Castro, E., Gaudieri, S., James, I., John, M., Wagner, R., Mallal, S., Pantaleo, G., (2007), Skewed association of polyfunctional antigen-specific CD8 T cell populations with HLA-B genotype, National Academy of Sciences. Proceedings, 104, 41, pages 16233 - 16238.
  • Flateau, P., James, I., Watson, R., Wood, G., Hendershott, P., (2007), Leaving the parental home in Australia over generations: Evidence from the Household, Income and Labour Dynamics in Australia (HILDA) survey., Journal of Population Research, 24, 1, pages 51 - 71.
  • Pocathikorn, A., Taylor, R., James, I., Mamotte, C., (2007), LDL-Receptor mRNA expression in men is downregulated within an hour of an acute fat load and is influenced by genetic polymorphism1-3, Journal of Nutrition, 137, Sep-07, pages 2062 - 2067.
  • Gaudieri, S., Rauch, A., Park, L., Freitas, E., Herrmann, S., Jeffrey, G., Cheng, W., Pfafferott, K., Hahn, V., Chapman, R., Battegay, M., Weber, R., Telenti, A., Furrer, H., James, I., Lucas, M., Mallal, S., (2006), Evidence of viral adaptation to HLA class I-restricted immune pressure in chronic hepatitis C virus infection, Journal of Virology, 80, 22, pages 11094 - 11104.
  • Pace, C., Keller, J., Nolan, D., James, I., Gaudieri, S., Moore, C., Mallal, S., (2006), Population level analysis of Human Immunodeficiency Virus Type 1 hypermutation and its relationship with APOBEC3G and vif genetic variation, Journal of Virology, 80, 18, pages 9259 - 9269.
  • Burgess, K., Price, P., James, I., Stone, S., Keane, N., Lim, A., Warmington, J., French, M., (2006), Interferon-gamma responses to Candida recover slowly or remain low in immunodeficient HIV patients responding to ART, Journal of Clinical Immunology, 26, 2, pages 160 - 167.
  • Fernandez, S., Rosenow, A., James, I., Roberts, S., Nolan, R., French, M., Price, P., (2006), Recovery of CD4+ T cells in HIV patients with a stable virologic response to antiretroviral therapy is associated with polymorphisms of interleukin-6 and central Major Histocompatibility Complex genes, Journal of Acquired Immune Deficiency Syndromes, 41, , pages 1 - 5.
  • Cherry, C., Nolan, D., James, I., McKinnon, E., Mallal, S., Gahan, M., Lal, L., McArthur, J., Wesselingh, S., (2006), Tissue-specific associations between mitochondrial DNA levels and current treatment status in HIV-infected individuals, Journal of Acquired Immune Deficiency Syndromes, 42, 4, pages 435 - 440.
  • Fernandez, S., Rosenow, A., James, I., Roberts, S., Nolan, R., French, M., Price, P., (2006), Recovery of CD4+T Cells in HIV Patients With a Stable Virologic Response to Antiretroviral Therapy Is Associate With Polymorphism of Interleukin-6 and Central major Histocompatibility Complex Genes, Journal of Acquired Immune Deficiency Syndromes, 41, 1, pages 1 - 5.
  • Redgrave, B., Stone, S., French, M., Krueger, R., James, I., Price, P., (2005), The effect of combination antiretroviral therapy on CD5+ B-cell activation and hypergammaglobulinemia in HIV-1 patients, HIV Medicine, 6, , pages 307 - 312.
  • Nolan, D., James, I., Mallal, S., (2005), HIV: Experiencing the pressures of modern life, Science, 307, , pages 1422 - 1424.
  • Martin, A., Nolan, D., James, I., Cameron, P., Keller, J., Moore, C., Phillips, E., Christiansen, F., Mallal, S., (2005), Predisposition to nevirapine hypersensitivity associated with HLA-DRB1*0101 and abrogated by low CD4+ T-cell counts, AIDS, 19, , pages 97 - 99.
  • John, M., Moore, C., James, I., Mallal, S., (2005), Interactive selective pressures of HLA-restricted immune responses and antiretroviral drugs on HIV-1, Antiviral Therapy, 10, , pages 551 - 555.
  • Hammond, E., Nolan, D., James, I., Metcalf, C., Mallal, S., (2004), Reduction of mitochondrial DNA content and respiratory chain activity occurs in adipocytes within 6-12 months of commencing nucleoside reverse transcriptase inhibitor therapy, AIDS, 18, 5, pages 815 - 827.
  • Keane, N., Price, P., Lee, S., Almeida, C., Stone, S., James, I., French, M., (2004), Restoration of CD4 T-Cell responses to cytomegalovirus in short-lived in severely immunodeficient HIV-infected patients responding to highly active antiretroviral therapy, Journal of Virology, 5, xx, pages 407 - 414.
  • Martin, A., Nolan, D., Gaudieri, S., Almeida, C., Nolan, R., James, I., Carvalho, F., Phillips, E., Christiansen, F., Purcell, A., McClusky, J., Mallal, S., (2004), Predisposition to abacavir hypersensitivity conferred by HLA-B*5701 and a haplotypic Hsp-Hom variant, National Academy of Sciences. Proceedings, 101, , pages 4180 - 4185.
  • Windsor, L., Morahan, G., Huang, D., McCann, V., Jones, T., James, I., Christiansen, F., Price, P., (2004), Alleles of the IL12B 3'UTR associate with late onset of type 1 diabetes, Human Immunology, 65, , pages 1432 - 1436.
  • Klepiela, P., Leslie, A., Honeyborne, I., Ramduth, D., Thobakgale, C., Chetty, S., Rathnavalu, P., Moore, C., Pfafferott, K., Hilton, L., Zimbwa, P., Moore, S., Allen, T., Brander, C., Addo, M., Altfeld, M., James, I., Mallal, S., Bunce, M., Barber, L., Szinger, J., Day, C., Klenerman, P., Mullins, J., Korber, B., Coovadia, H., Walker, B., Goulder, P., (2004), Dominant influence of HLA-B in mediating the potential co-evolution of HIV and HLA, Nature: international weekly journal of science, 432, 7018, pages 769 - 774.
  • Keane, N., Price, P., Almeida, C., Stone, S., James, I., French, M., (2004), Restoration of CD4 T-cell responses to cytomegalovirus is short-lived in severely immunodeficient HIV-infected patients responding to highly active antiretroviral therapy, HIV Medicine, 5, , pages 407 - 414.
  • Price, P., James, I., Fernandez, S., French, M., (2004), Alleles of the gene encoding IL-1alpha may predict control of plasma viraemia in HIV-1 patients on highly active antiretroviral therapy, AIDS, 18, , pages 1495 - 1501.
  • Nolan, D., Moore, C., Castley, A., Sayer, D., Mamotte, C., John, M., James, I., Mallal, S., (2003), Tumour necrosis factor - alpha gene-238 G/A promoter polymorphism associated with more rapid onset of lipodystrophy., AIDS, 17, 1, pages 121 - 122.
  • McKinnon, E., James, I., John, M., Mallal, S., (2003), Viral load detectability profiles for HIV-infection., Statistics in Medicine, 22, , pages 385 - 396.
  • Nolan, D., Hammond, E., James, I., McKinnon, E., Mallal, S., (2003), Contribution of nucleoside-analogue reverse transcriptase inhibitor therapy to lipoatrophy from the population level to the cellular level., Antiviral Therapy, 8, , pages 141 - 150.
  • Doherty, D., James, I., Newnham, J., (2002), Estimation of the Doppler ultrasound maximal umbilical waveform envelope: I. Estimation method, Ultrasound in Medicine & Biology, 28, 10, pages 1251 - 1259.
  • Moore, C., John, M., James, I., Christiansen, F., Witt, C., Mallal, S., (2002), Evidence of HIV-1 adaptation to HLA-restricted immune responses at a population level, Science, 296, , pages 1439 - 1443.
  • Doherty, D., James, I., Newnham, J., (2002), Estimation of the Doppler ultrasound maximal umbilical waveform envelope: II. Prediction of fetal distress, Ultrasound in Medicine & Biology, 28, 10, pages 1261 - 1270.
  • Mallal, S., Nolan, D., Witt, C., Masel, G., Martin, A., Moore, C., Sayer, D., Castley, A., Mamotte, C., Maxwell, D., James, I., Christiansen, F., (2002), Association between presence of HLA-B*5701, HLA-DR7, and HLA-DQ3 and hypersensitivity to HIV-1 reverse-transcriptase inhibitor abacavir, The Lancet, 359, , pages 727 - 732.
  • de, M., James, I., Jennings, P., Koeyers, J., (2001), Cluster analysis of radionuclide concentrations in beach sand, Applied Radiation and Isotopes, 54, , pages 535 - 542.
  • John, M., Moore, C., James, I., Nolan, D., Upton, R., McKinnon, E., Mallal, S., (2001), Chronic hyperlactatemia in HIV infected patients taking antiretroviral therapy, AIDS, 15, , pages 717 - 723.
  • Vu, H., Segal, M., Knuiman, M., James, I., (2001), Asymptotic and small sample statistical properties of random frailty variance estimates for shared gamma frailty models, Communications in Statistics - Simulation and Computation, 30, 3, pages 581 - 595.
  • Nolan, D., Upton, R., McKinnon, E., John, M., James, I., Adler, B., Roff, G., Vasikaran, S., Mallal, S., (2001), Stable or increasing bone mineral density in HIV-infected patients treated with nelfinavir or indinavir, AIDS, 15, , pages 1275 - 1280.
  • James, I., (2000), Contribution of nucleoside analogue reverse transcriptase inhibitors to subcutaneous fat wasting in patients with HIV infection, AIDS, 14, , pages 1 - 1.
  • James, I., (2000), Cluster analysis of radionuclide concentrations in beach sand, Applied Radiation and Isotopes, 52, , pages 1 - 1.
  • James, I., (2000), Immune restoration disease after the treatment of immunodeficient HIV-infected patients with highly active antiretroviral therapy, HIV Medicine, 1, , pages 107 - 115.
  • Gales, N., Williamson, P., Higgins, L., Blackberry, M., James, I., (1997), Evidence for a prolonged postimplantation period in the Australian sea lion (Neophoca cinerea), Journal of Reproduction and Fertility, 111, 2, pages 159 - 163.
  • James, I., (1997), Accelerated Failure Time Models, Encyclopeadia of Biostatistics, , , pages -.
  • Segal, M., Neuhaus, J., James, I., (1997), Dependence estimation for marginal models of multivariate survival data, Lifetime Data Analysis, 3, , pages 251 - 268.